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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41535718_41536606_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41535718 - 41536606
Intron Length:
889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGACC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
TTTTCCTTCTTC
Flanking Amino Acid:
RDHQSSPYAAVPYKLFTDHG
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.6
33.9
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
90.2
0.9
0.6
88.8
20.5
Minor 5ss
33.5
-1.9
3.1
43.7
43.7
Minor BPS
47.1
-0.2
3.6
77.93
38.5

Associated Gene:

Gene:
PHOX2B
Ensembl Gene ID:
ENSAPLG00000007835
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008123
41533259 - 41536847
3589