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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41546055_41551941_F

Intron Information:

Intron Rank:
139761
Intron Class:
major
Intron Phase:
Intron Coordinates:
41546055 - 41551941
Intron Length:
5887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGCTGAT
5'SS Class:
major
3'SS Sequence:
TGTTTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATATTAATAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.2
68.4
38.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
88.6
0.87
0.7
81.3
36.4
Minor 5ss
33.1
-1.9
3.5
48.2
47.9
Minor BPS
51.8
0.14
1.8
73.34
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025153
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040692
41545879 - 41553338
7460