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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41613221_41613614_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41613221 - 41613614
Intron Length:
394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTATTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
ACATCCTTATTT
Flanking Amino Acid:
RYSSRRNPYCRFHAYLGLIR
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
1
82.1
37.7
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
82.3
0.73
0.7
81
29.8
Minor 5ss
45.8
-0.4
2.9
67.6
43.1
Minor BPS
65
0.55
1.6
75.08
42

Associated Gene:

Gene:
TMEM33
Ensembl Gene ID:
ENSAPLG00000007860
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026373
41607514 - 41613709
6196