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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41627352_41628960_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41627352 - 41628960
Intron Length:
1609

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCCTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
GTTGTCTGAAAA
Flanking Amino Acid:
QAAALRRACHGWQASMKSVS
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
69.7
35.1
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
77.1
0.61
0.9
76.9
31.8
Minor 5ss
29
-2.4
3.1
36.8
40.4
Minor BPS
54
0.12
1.7
66.07
39.9

Associated Gene:

Gene:
SLC30A9
Ensembl Gene ID:
ENSAPLG00000007998
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008340
41627255 - 41658918
31664