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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41632039_41634763_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41632039 - 41634763
Intron Length:
2725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTTCATCTATT
Flanking Amino Acid:
SFLKDPIQVKVKAVLKKREY
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
77.3
32.6
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
78
0.63
1
82.5
32.9
Minor 5ss
30.9
-2.2
3.2
39
46.4
Minor BPS
49
0
2.1
74.63
41.7

Associated Gene:

Gene:
SLC30A9
Ensembl Gene ID:
ENSAPLG00000007998
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008340
41627255 - 41658918
31664