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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41636624_41637019_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41636624 - 41637019
Intron Length:
396

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGTCA
5'SS Class:
major
3'SS Sequence:
TTACTCTGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAA
U12 Branch Point Sequence:
GGTACTTTTACT
Flanking Amino Acid:
TVYLRSDVEAKSLEVWGSPE
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
72.1
33.7
Major BPS
72.1
0.55
1.2
63.7
43.9
Major PPT
77.7
0.62
0.9
73.2
37
Minor 5ss
38.7
-1.3
3.2
48.1
42
Minor BPS
59.7
0.38
1.7
74.62
41.6

Associated Gene:

Gene:
SLC30A9
Ensembl Gene ID:
ENSAPLG00000007998
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008340
41627255 - 41658918
31664