About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41639686_41642462_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41639686 - 41642462
Intron Length:
2777

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTTAT
U12 Branch Point Sequence:
TGTTCTTTAGCT
Flanking Amino Acid:
PGKVVMVAICINGLNFFFKL
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.9
86.1
24.6
Major BPS
67.4
0.43
1.1
57.4
41.4
Major PPT
89.8
0.89
0.7
87.9
29.4
Minor 5ss
46.2
-0.4
2.8
62.8
42
Minor BPS
74.8
0.86
1.5
88.81
36

Associated Gene:

Gene:
SLC30A9
Ensembl Gene ID:
ENSAPLG00000007998
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008340
41627255 - 41658918
31664