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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4164190_4166436_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4164190 - 4166436
Intron Length:
2247

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGAATT
5'SS Class:
strong_major
3'SS Sequence:
GCTCTCATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAT
U12 Branch Point Sequence:
TTGCTCTCATTT
Flanking Amino Acid:
VQLPPERRLVGKQCMGLVDL
Intron Amino Acid Position:
582

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.8
86.3
29
Major BPS
79.2
0.72
1
75
40
Major PPT
73.5
0.53
0.8
70.4
34.9
Minor 5ss
45.5
-0.5
2.9
66.2
44.9
Minor BPS
49.1
0.02
1.8
69.09
42.3

Associated Gene:

Gene:
GSTCD
Ensembl Gene ID:
ENSAPLG00000016467
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040239
4104569 - 4166573
62005