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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41647418_41647820_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41647418 - 41647820
Intron Length:
403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCTAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAC
U12 Branch Point Sequence:
TTTTCTTCTATA
Flanking Amino Acid:
HPHPIESLLWAYCILAGSLV
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
71.1
37.5
Major BPS
69.1
0.48
1
70
32.1
Major PPT
84.8
0.78
0.8
80.4
30.6
Minor 5ss
42.7
-0.8
2.9
47.1
48.3
Minor BPS
58.7
0.27
1.8
75.17
36.3

Associated Gene:

Gene:
SLC30A9
Ensembl Gene ID:
ENSAPLG00000007998
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008340
41627255 - 41658918
31664