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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41747269_41748811_R

Intron Information:

Intron Rank:
137505
Intron Class:
major
Intron Phase:
Intron Coordinates:
41747269 - 41748811
Intron Length:
1543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGAATC
5'SS Class:
major
3'SS Sequence:
ATTGCCATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CATTTCTTATTG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
71.6
38.4
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
75.7
0.58
0.9
71.2
38.9
Minor 5ss
36.8
-1.5
3.3
48.8
41.7
Minor BPS
56.8
0.08
1.7
59.59
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021452
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019235
41741483 - 41748994
7512