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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41750811_41751360_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41750811 - 41751360
Intron Length:
550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTGAGTGCC
5'SS Class:
major
3'SS Sequence:
TTTCTTCTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTAACAC
U12 Branch Point Sequence:
TTTTCCTCTTCT
Flanking Amino Acid:
RQTPDPGVTAQPIYVPFLIV
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.7
0.35
1.3
60.6
38.8
Major BPS
49.5
-0
1.1
58.7
36.3
Major PPT
87.5
0.84
0.7
80.8
31.2
Minor 5ss
30.4
-2.2
3.1
40.5
38.7
Minor BPS
44.8
-0.3
3.7
84.68
41.8

Associated Gene:

Gene:
SHISA3
Ensembl Gene ID:
ENSAPLG00000008422
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008745
41750513 - 41751812
1300