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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41762050_41767508_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41762050 - 41767508
Intron Length:
5459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTGTAA
5'SS Class:
major
3'SS Sequence:
GCTTTCTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
AATTTTTTCACA
Flanking Amino Acid:
EDPGAVVHGKSLTERAQLLK
Intron Amino Acid Position:
785

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
64.9
37.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
81
0.7
0.8
73.3
37.2
Minor 5ss
35
-1.7
3.4
46.8
48.5
Minor BPS
59.5
0.29
1.7
70.12
36.2

Associated Gene:

Gene:
ATP8A1
Ensembl Gene ID:
ENSAPLG00000008428
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008812
41761209 - 41837937
76729