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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41768080_41777518_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41768080 - 41777518
Intron Length:
9439

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ATCACCTCAACA
Flanking Amino Acid:
IPMAPDMSGEAAMMFSSGVF
Intron Amino Acid Position:
725

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
78
32.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
95.4
1.02
0.6
88.7
28.3
Minor 5ss
37.8
-1.4
3.5
55
49.2
Minor BPS
63.8
0.43
1.6
71.17
40.6

Associated Gene:

Gene:
ATP8A1
Ensembl Gene ID:
ENSAPLG00000008428
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008812
41761209 - 41837937
76729