About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41777627_41778119_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41777627 - 41778119
Intron Length:
493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATGAT
U12 Branch Point Sequence:
TTTCTTTTAACA
Flanking Amino Acid:
AGLETSYWTLFSHIAIWGSI
Intron Amino Acid Position:
689

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
75.9
35.2
Major BPS
69.5
0.48
1.2
59.7
46.7
Major PPT
87.2
0.84
0.8
84.6
28.7
Minor 5ss
38.8
-1.3
2.9
45.4
43.9
Minor BPS
78.7
0.9
1
84.25
28.8

Associated Gene:

Gene:
ATP8A1
Ensembl Gene ID:
ENSAPLG00000008428
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008812
41761209 - 41837937
76729