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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41786306_41788741_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41786306 - 41788741
Intron Length:
2436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGATAAA
5'SS Class:
major
3'SS Sequence:
TCTTTTCCCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATGGATT
Flanking Amino Acid:
SQNALDFNTKVFWVHCLNGL
Intron Amino Acid Position:
623

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
76.5
34.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
81.9
0.72
0.6
81.5
23.5
Minor 5ss
33
-1.9
3
41.3
45.3
Minor BPS
55.7
0.26
1.8
76.99
39.7

Associated Gene:

Gene:
ATP8A1
Ensembl Gene ID:
ENSAPLG00000008428
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008812
41761209 - 41837937
76729