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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41789080_41794497_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41789080 - 41794497
Intron Length:
5418

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTTA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAG
U12 Branch Point Sequence:
ATTTGAGTAATA
Flanking Amino Acid:
YKNIVLYIIEIWFAFVNGFS
Intron Amino Acid Position:
557

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
86
25
Major BPS
63.6
0.34
1.5
63.1
44.4
Major PPT
88.9
0.87
0.6
87.4
22.9
Minor 5ss
43.8
-0.7
2.8
58.6
45.8
Minor BPS
45.8
-0.3
2.5
66.61
40.2

Associated Gene:

Gene:
ATP8A1
Ensembl Gene ID:
ENSAPLG00000008428
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008812
41761209 - 41837937
76729