About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41794609_41794708_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41794609 - 41794708
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
CCATTTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GTGTTCTAAATG
Flanking Amino Acid:
ANSSDYSIAQFKYLKNLLLV
Intron Amino Acid Position:
520

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.1
1.09
0.7
87
30
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
84.6
0.78
0.8
79.8
31.9
Minor 5ss
35.9
-1.6
3
49.5
46.7
Minor BPS
55.3
0.03
1.8
59.09
43.4

Associated Gene:

Gene:
ATP8A1
Ensembl Gene ID:
ENSAPLG00000008428
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008812
41761209 - 41837937
76729