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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41794893_41799152_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41794893 - 41799152
Intron Length:
4260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTATACTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TCTATGTTATTT
Flanking Amino Acid:
ALSCKAVICCRVSPLQKSEV
Intron Amino Acid Position:
458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.8
88.6
27.1
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
74.4
0.55
0.9
71.6
39
Minor 5ss
42.7
-0.8
3.4
64.1
47.4
Minor BPS
46.5
-0.1
2.2
67.45
44.1

Associated Gene:

Gene:
ATP8A1
Ensembl Gene ID:
ENSAPLG00000008428
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008812
41761209 - 41837937
76729