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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41822753_41825180_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
41822753 - 41825180
Intron Length:
2428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGTATT
5'SS Class:
strong_major
3'SS Sequence:
AGGCCAACATTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TGTAATTAAAAT
Flanking Amino Acid:
KKCTVAGVAYGLLTGTSGNA
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
81.8
38.5
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
48.8
-0
1
42.9
36.9
Minor 5ss
39.8
-1.1
3.2
51.2
45.5
Minor BPS
47.3
-0.1
1.9
67.86
42.5

Associated Gene:

Gene:
ATP8A1
Ensembl Gene ID:
ENSAPLG00000008428
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024195
41799149 - 41839554
40406