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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41837738_41839528_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41837738 - 41839528
Intron Length:
1791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTAATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTTCTCTTAATA
Flanking Amino Acid:
ADLISLSSSEPQAMCYIE
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1.1
82
30.9
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
80.2
0.68
0.8
77.7
29.6
Minor 5ss
33.4
-1.9
2.9
41
44.9
Minor BPS
80
0.94
1
84.43
28.5

Associated Gene:

Gene:
ATP8A1
Ensembl Gene ID:
ENSAPLG00000008428
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024195
41799149 - 41839554
40406