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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41839603_41842229_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
41839603 - 41842229
Intron Length:
2627

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAGATG
5'SS Class:
major
3'SS Sequence:
CTGGGATGTGTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TCATTTTCAAAC
Flanking Amino Acid:
IPADTVLLSSRWQ*
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.1
66.7
44.4
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
57.5
0.17
1.1
50.7
43
Minor 5ss
33.8
-1.8
3.6
47.3
48.3
Minor BPS
50.9
0.01
1.6
60.07
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017077
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046993
41839529 - 41860045
20517