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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41842304_41843216_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41842304 - 41843216
Intron Length:
913

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTATT
5'SS Class:
strong_major
3'SS Sequence:
AGTTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAC
U12 Branch Point Sequence:
AGACCATTAACC
Flanking Amino Acid:
GAWEIVHWEKVDVGDIVIIK
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.8
88.7
25.2
Major BPS
69.5
0.49
1
71.3
30.3
Major PPT
84.7
0.78
0.8
81.7
35.4
Minor 5ss
42.3
-0.8
2.8
59.2
45.4
Minor BPS
59.8
0.29
1.6
66.1
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017077
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046993
41839529 - 41860045
20517