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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41843258_41844507_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41843258 - 41844507
Intron Length:
1250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AATTCTTTATTT
Flanking Amino Acid:
DNAVNKKQTQVLRNGAWEIV
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
33.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
93.1
0.97
0.7
92.3
26.6
Minor 5ss
33.7
-1.9
3.3
48
47.7
Minor BPS
66.7
0.6
1.5
79.34
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017077
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046993
41839529 - 41860045
20517