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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41847330_41849018_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41847330 - 41849018
Intron Length:
1689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATCA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTTAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
CTCTTTTTAATA
Flanking Amino Acid:
AFFLFIALLQQIPDVSPTGR
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
27.6
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
78.8
0.65
0.8
76.6
30.6
Minor 5ss
38.2
-1.3
3
48.6
47.1
Minor BPS
68.4
0.57
1.2
69.67
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017077
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046993
41839529 - 41860045
20517