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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41849119_41850976_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41849119 - 41850976
Intron Length:
1858

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTAACT
5'SS Class:
major
3'SS Sequence:
CTTTGTCTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
ACTATTATAATT
Flanking Amino Acid:
QLTKFCNNHVSTAKYNIITF
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
72.7
36.1
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
83.1
0.74
0.7
81.2
30.8
Minor 5ss
42.3
-0.9
2.8
59.4
44.8
Minor BPS
50.6
0.1
1.6
67.13
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017077
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046993
41839529 - 41860045
20517