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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41896615_41897250_F

Intron Information:

Intron Rank:
123976
Intron Class:
major
Intron Phase:
Intron Coordinates:
41896615 - 41897250
Intron Length:
636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTACATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TGTATCTTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
77.4
0.62
0.8
74.8
34.4
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
55.5
0.25
1.8
74.52
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016817
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031425
41895793 - 41898198
2406