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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41917126_41942866_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41917126 - 41942866
Intron Length:
25741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCATAT
U12 Branch Point Sequence:
TATACTGCAAGT
Flanking Amino Acid:
LFDNLSKVFQVSSVPEFGRI
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
74.2
0.6
1
69.3
38.4
Major PPT
85.8
0.8
0.8
77.2
37
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
43.5
-0.4
2.3
65.9
44.6

Associated Gene:

Gene:
GRXCR1
Ensembl Gene ID:
ENSAPLG00000009269
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009638
41916730 - 41953473
36744