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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41943107_41950752_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41943107 - 41950752
Intron Length:
7646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTACTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTCTTCTTACTA
Flanking Amino Acid:
VVFIDGHYLGGAEKILLMNE
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.2
30.8
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
74.2
0.55
0.9
70.8
33.8
Minor 5ss
34.6
-1.8
2.7
34
41.5
Minor BPS
65.9
0.5
1.6
74.1
38.6

Associated Gene:

Gene:
GRXCR1
Ensembl Gene ID:
ENSAPLG00000009269
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009638
41916730 - 41953473
36744