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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_420923_421294_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
420923 - 421294
Intron Length:
372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTCAG
5'SS Class:
strong_major
3'SS Sequence:
GAATTTCCTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
TTTTTTTCGATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
70.6
41.3
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
74.7
0.55
0.9
70.7
40.5
Minor 5ss
39.7
-1.2
2.8
49
47.2
Minor BPS
63.1
0.49
1.5
82.19
33.4

Associated Gene:

Gene:
ALPK1
Ensembl Gene ID:
ENSAPLG00000013490
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038111
420710 - 460307
39598