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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4210547_4214969_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4210547 - 4214969
Intron Length:
4423

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CTGTTATGAAAA
Flanking Amino Acid:
QLGPDGRTCIDIDECATGRV
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
81.4
32.7
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
84.8
0.78
0.8
80.2
32
Minor 5ss
33
-1.9
3.5
48.2
47.9
Minor BPS
47.3
-0.2
1.8
58.27
41

Associated Gene:

Gene:
NPNT
Ensembl Gene ID:
ENSAPLG00000004656
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021324
4186159 - 4233456
47298
ENSAPLT00000004808
4186159 - 4233456
47298