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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_42269670_42322547_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42269670 - 42322547
Intron Length:
52878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TGCCTTGTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GTATATTTAATA
Flanking Amino Acid:
AWPPQRTVSPK
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.8
34.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
66.6
0.37
1
66.2
39.6
Minor 5ss
41.8
-0.9
2.8
56.1
41.3
Minor BPS
64.4
0.45
1.4
70.02
36

Associated Gene:

Gene:
KCTD8
Ensembl Gene ID:
ENSAPLG00000009393
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009782
42268862 - 42322551
53690