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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_42378932_42379565_R

Intron Information:

Intron Rank:
148770
Intron Class:
major
Intron Phase:
Intron Coordinates:
42378932 - 42379565
Intron Length:
634

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
TTTTCACCTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATTTTTTCACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.1
71.8
38.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
80.2
0.68
0.7
74.6
29.5
Minor 5ss
37.3
-1.4
3.3
51.5
44.9
Minor BPS
56.2
0.27
1.8
77.81
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027516
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035286
42375715 - 42380209
4495