Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_42403529_42407489_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

42403529 - 42407489

Intron Length:

3961

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTAAGTATC

5'SS Class:

major

3'SS Sequence:

TTTTATTTTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTTTTTATTT

Flanking Amino Acid:

LSTSAVVFSLQGILGTLLAL

Intron Amino Acid Position:

261

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.68

79.3

34.5

Major BPS

96.5

1.15

0.6

34.2

Major PPT

87.9

0.85

0.7

81.4

35.9

Minor 5ss

42.5

-0.8

2.8

60.5

37.7

Minor BPS

70.5

0.72

1.5

86.8

33.5

Associated Gene:

Gene:

YIPF7

Ensembl Gene ID:

ENSAPLG00000009441

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009853

42402840 - 42415061

12222

ENSAPLT00000039837

42402751 - 42417344

14594