Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_42414080_42414944_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

42414080 - 42414944

Intron Length:

865

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTATG

5'SS Class:

strong_major

3'SS Sequence:

TTTCTTGTCTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTTAC

U12 Branch Point Sequence:

TTTACTGCAATT

Flanking Amino Acid:

GSSENLSARRKCQIGDQPPA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.3

0.88

0.9

84.6

33.2

Major BPS

68.8

0.47

1.2

63.4

Major PPT

85.1

0.79

0.8

84.1

30.8

Minor 5ss

41.1

-1

2.8

51.8

38.9

Minor BPS

49.4

0.04

2.2

76.62

40.5

Associated Gene:

Gene:

YIPF7

Ensembl Gene ID:

ENSAPLG00000009441

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039837

42402751 - 42417344

14594

ENSAPLT00000009853

42402840 - 42415061

12222