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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_42415062_42417234_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
42415062 - 42417234
Intron Length:
2173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCACCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTTCTCACCA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
84.2
26.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.3
0.77
0.8
78.9
34.4
Minor 5ss
37.7
-1.4
2.7
46.1
36.1
Minor BPS
63.4
0.42
1.8
79.1
37.4

Associated Gene:

Gene:
YIPF7
Ensembl Gene ID:
ENSAPLG00000009441
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039837
42402751 - 42417344
14594