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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_42442167_42442423_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42442167 - 42442423
Intron Length:
257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTTAA
5'SS Class:
major
3'SS Sequence:
TTTTTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TTTTTTTCCACA
Flanking Amino Acid:
NYLLNLIDTPGHVDFNYEVS
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.3
32.1
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
91.4
0.93
0.6
87.9
22.3
Minor 5ss
41.7
-0.9
2.8
54.7
43.6
Minor BPS
55.3
0.16
2
74.67
37.4

Associated Gene:

Gene:
GUF1
Ensembl Gene ID:
ENSAPLG00000009504
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009955
42439408 - 42455776
16369