Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_42443014_42443419_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

42443014 - 42443419

Intron Length:

406

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATGCAG

5'SS Class:

major

3'SS Sequence:

TGTTGTTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTTAG

U12 Branch Point Sequence:

TATTTAGCAATT

Flanking Amino Acid:

QLAIIPVINKIDLKHADPER

Intron Amino Acid Position:

187

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.1

0.64

1.1

62.4

43.6

Major BPS

64.7

0.37

1.5

63.7

43.9

Major PPT

0.83

0.8

84.6

Minor 5ss

30.2

-2.3

3.2

38.2

46.7

Minor BPS

45.2

-0.2

2.3

70.17

40.9

Associated Gene:

Gene:

GUF1

Ensembl Gene ID:

ENSAPLG00000009504

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009955

42439408 - 42455776

16369