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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_42443504_42443813_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42443504 - 42443813
Intron Length:
310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGATCT
5'SS Class:
strong_major
3'SS Sequence:
GGGTTTGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTCTGATAAAA
Flanking Amino Acid:
FDIPVNECIRISAKQGTNIE
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
75.1
35.8
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
68.9
0.43
1
65.8
45.3
Minor 5ss
40.1
-1.1
3.1
49.7
46.1
Minor BPS
46.1
-0.3
2.3
66.85
39.1

Associated Gene:

Gene:
GUF1
Ensembl Gene ID:
ENSAPLG00000009504
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009955
42439408 - 42455776
16369