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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_42443879_42444941_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42443879 - 42444941
Intron Length:
1063

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTAAGTTAC
5'SS Class:
major
3'SS Sequence:
TCTTTTGTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTGTTTTAAAT
Flanking Amino Acid:
VLEKVIEKIPPPSFNTTDPL
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.3
69.7
37.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.5
0.64
1
76.3
37.7
Minor 5ss
42.4
-0.8
2.8
57.1
40.8
Minor BPS
64.5
0.53
1.5
78.79
37.6

Associated Gene:

Gene:
GUF1
Ensembl Gene ID:
ENSAPLG00000009504
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009955
42439408 - 42455776
16369