About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_42448102_42448687_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42448102 - 42448687
Intron Length:
586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATAAA
U12 Branch Point Sequence:
AAGAAATAGACC
Flanking Amino Acid:
DSSLALGAGWRLGFLGLLHM
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.6
37.3
Major BPS
63.5
0.33
1.2
64.3
39.6
Major PPT
90.7
0.92
0.6
84.9
29.9
Minor 5ss
31.2
-2.1
3.5
46.7
48.6
Minor BPS
39.1
-0.8
1.9
43.85
37.1

Associated Gene:

Gene:
GUF1
Ensembl Gene ID:
ENSAPLG00000009504
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009955
42439408 - 42455776
16369