Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_42449490_42462212_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

42449490 - 42462212

Intron Length:

12723

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGCACT

5'SS Class:

strong_major

3'SS Sequence:

TCACTTTCCTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTATAT

U12 Branch Point Sequence:

ATTATATCACTT

Flanking Amino Acid:

LRVKTVKYFKGRQCF*

Intron Amino Acid Position:

331

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.87

0.8

80.5

33.9

Major BPS

70.4

0.51

67.1

39.4

Major PPT

78.3

0.64

0.8

76.7

31.7

Minor 5ss

36.6

-1.5

2.9

49.5

46.5

Minor BPS

-0.3

1.9

64.21

40.3

Associated Gene:

Gene:

GNPDA2

Ensembl Gene ID:

ENSAPLG00000009862

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010272

42449473 - 42465852

16380