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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_42452868_42453649_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42452868 - 42453649
Intron Length:
782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTTGT
5'SS Class:
major
3'SS Sequence:
CTTTCTGCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ACTTTCTGAAAA
Flanking Amino Acid:
PVEELATIIHCDKAYATGKF
Intron Amino Acid Position:
563

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
71.5
41.1
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
83.2
0.75
0.8
80.9
31.2
Minor 5ss
40.7
-1
3.2
55
44.5
Minor BPS
59.7
0.3
1.5
67.67
38.4

Associated Gene:

Gene:
GUF1
Ensembl Gene ID:
ENSAPLG00000009504
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009955
42439408 - 42455776
16369