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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_42453770_42454645_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42453770 - 42454645
Intron Length:
876

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
TTCTGTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ACTCTATTAATG
Flanking Amino Acid:
AIGKKIIARETLKAYRKNVV
Intron Amino Acid Position:
603

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.3
77.6
32.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
88.4
0.86
0.7
83.2
32
Minor 5ss
33.4
-1.9
3.2
39.2
39.9
Minor BPS
51.7
-0
1.6
55.9
39.7

Associated Gene:

Gene:
GUF1
Ensembl Gene ID:
ENSAPLG00000009504
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009955
42439408 - 42455776
16369