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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_42459151_42462212_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42459151 - 42462212
Intron Length:
3062

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCTGTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTGCATTAATA
Flanking Amino Acid:
LRVKTVKYFKGPDIHDYLQR
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
80.5
33.9
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
73.4
0.53
0.9
66.2
40.8
Minor 5ss
36.6
-1.5
2.9
49.5
46.5
Minor BPS
69.5
0.61
1.7
80.44
35.6

Associated Gene:

Gene:
GNPDA2
Ensembl Gene ID:
ENSAPLG00000009862
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041526
42459078 - 42465852
6775