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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_42463799_42464112_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42463799 - 42464112
Intron Length:
314

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAGAA
U12 Branch Point Sequence:
CTTTGTTTAACA
Flanking Amino Acid:
GRYFTLGLPTGSTPLGCYKK
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.8
1.15
0.7
91.8
25.6
Major BPS
62.2
0.3
1
59
38
Major PPT
80.7
0.69
0.9
76.7
36.2
Minor 5ss
29.8
-2.3
4.1
49.5
46.7
Minor BPS
69.3
0.6
1.8
78.6
38.6

Associated Gene:

Gene:
GNPDA2
Ensembl Gene ID:
ENSAPLG00000009862
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010272
42449473 - 42465852
16380
ENSAPLT00000042857
42457984 - 42465852
7869
ENSAPLT00000041526
42459078 - 42465852
6775
ENSAPLT00000030933
42452699 - 42465852
13154