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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_42464278_42465260_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42464278 - 42465260
Intron Length:
983

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGCGGC
5'SS Class:
major
3'SS Sequence:
TTATTTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTATTTTTAAAA
Flanking Amino Acid:
PLGTAEASPGGLSSFLPYKL
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.1
57.5
42.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
84.2
0.77
0.7
78.1
36.2
Minor 5ss
30.8
-2.2
3.3
32.5
42.6
Minor BPS
71.1
0.66
1.3
76.99
33.4

Associated Gene:

Gene:
GNPDA2
Ensembl Gene ID:
ENSAPLG00000009862
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041526
42459078 - 42465852
6775
ENSAPLT00000030933
42452699 - 42465852
13154
ENSAPLT00000010272
42449473 - 42465852
16380
ENSAPLT00000042857
42457984 - 42465852
7869