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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_42510578_42524049_R

Intron Information:

Intron Rank:
134848
Intron Class:
major
Intron Phase:
Intron Coordinates:
42510578 - 42524049
Intron Length:
13472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAG
U12 Branch Point Sequence:
TAGCTTCTAAGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
77.3
37.6
Major BPS
70.6
0.51
1.5
77.9
34.9
Major PPT
88.6
0.87
0.6
84.3
23.6
Minor 5ss
36.9
-1.5
2.9
51.8
44.6
Minor BPS
45
-0.3
1.8
53.91
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019884
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025196
42509324 - 42525042
15719