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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_42531881_42533878_R

Intron Information:

Intron Rank:
134850
Intron Class:
major
Intron Phase:
Intron Coordinates:
42531881 - 42533878
Intron Length:
1998

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.4
1.14
0.6
94.3
17.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
94.4
1
0.5
91.2
20.6
Minor 5ss
38.6
-1.3
3.4
57.8
46.8
Minor BPS
69.5
0.61
1.7
82.25
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019884
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043824
42531784 - 42534202
2419