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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4264128_4275542_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4264128 - 4275542
Intron Length:
11415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTCTG
5'SS Class:
major
3'SS Sequence:
ATATCTGCTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TGTTAATTATAT
Flanking Amino Acid:
VGNAVKNTAAFAAHLVKNKY
Intron Amino Acid Position:
858

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1.1
66
45.2
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
74
0.54
1
70.5
40.4
Minor 5ss
40.7
-1
3.1
60.3
43.9
Minor BPS
48
-0
2.1
72.88
43

Associated Gene:

Gene:
TBCK
Ensembl Gene ID:
ENSAPLG00000005181
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005418
4263985 - 4367600
103616