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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_42696431_42696791_F

Intron Information:

Intron Rank:
146935
Intron Class:
major
Intron Phase:
Intron Coordinates:
42696431 - 42696791
Intron Length:
361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTTAA
5'SS Class:
major
3'SS Sequence:
TTTTTTCCCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATTATTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.3
32.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.6
0.78
0.6
81.2
24.1
Minor 5ss
41.7
-0.9
2.8
54.7
43.6
Minor BPS
56.7
0.29
1.8
77.56
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029135
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040145
42695957 - 42699283
3327
ENSAPLT00000033820
42695096 - 42698880
3785